PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.049620.1
Common NameCsa_3G212490
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 415aa    MW: 46369.7 Da    PI: 7.3972
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.049620.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32.1e-30176235159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  Cucsa.049620.1 176 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 235
                     58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.5E-33161237IPR003657WRKY domain
SuperFamilySSF1182907.32E-28169237IPR003657WRKY domain
PROSITE profilePS5081129.161171237IPR003657WRKY domain
SMARTSM007743.2E-37176236IPR003657WRKY domain
PfamPF031063.0E-27177235IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MEMDRIKEEN KALRKAVEQT MKDYYDLEMK IGFFQQNNNL NNKLECDHNF LSFHGNENKR  60
HEELTKHDLE LGEMAKKKRR VGSASKEDEM RESELGLSLG LHTKNSNDDL EQEDNDRELL  120
IEEERREIKN KENSIIMSNF NSIQNKPQRP ELQAMAPPQN RKARVSVRAR CESATMNDGC  180
QWRKYGQKIA KGNPCPRAYY RCTVAPGCPV RKQVQRCLED MSILITTYEG THNHPLPVGA  240
TAMASTASAA SASFMLLDSS NTNNTNLSNS LHLNPNILNS SSPSFLQTQN PTNHLFTPLF  300
PTSSTSHFPH SFYHSNFQPN HLVGPLDRRT WKPTDDNKPP PFTPDAVSAI ASDPKFRVAV  360
AAAISSLINK ENEHMTTSMT GETVTDGKGG GGSDSDSGNK KWVVESLSSK SNGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-22163239176WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17579KKKRR
27580KKKRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840190.0GU984019.1 Cucumis sativus WRKY protein (WRKY19) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650228.10.0PREDICTED: uncharacterized protein LOC101215114 isoform X1
TrEMBLA0A0A0LC020.0A0A0A0LC02_CUCSA; Uncharacterized protein
STRINGPGSC0003DMT4000765912e-93(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93203141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.13e-64WRKY DNA-binding protein 9
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Ling J, et al.
    Genome-wide analysis of WRKY gene family in Cucumis sativus.
    BMC Genomics, 2011. 12: p. 471
    [PMID:21955985]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]